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Review Article| Volume 49, ISSUE 9, P947-956, September 2017

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Clinical usefulness of serum antibodies as biomarkers of gastrointestinal and liver diseases

      Abstract

      The progressively growing knowledge of the pathophysiology of a number of immune-mediated gastrointestinal and liver disorders, including autoimmune atrophic gastritis, coeliac disease, autoimmune enteropathy, inflammatory bowel disease, autoimmune hepatitis, primary sclerosing cholangitis, primary biliary cholangitis and autoimmune pancreatitis, together with the improvement of their detection methods have increased the diagnostic power of serum antibodies. In some cases – coeliac disease and autoimmune atrophic gastritis – they have radically changed gastroenterologists’ diagnostic ability, while in others – autoimmune hepatitis, inflammatory bowel disease and autoimmune pancreatitis – their diagnostic performance is still inadequate. Of note, serum antibody misuse in clinical practice has raised a number of controversies, which may generate confusion in the diagnostic management of the aforementioned disorders. In this review, we critically re-evaluate the usefulness of serum antibodies as biomarkers of immune-mediated gastrointestinal and liver disorders, and discuss their pitfalls and merits.

      Keywords

      1. Introduction

      The expansion of the pathogenic knowledge of immune-mediated gastrointestinal and liver diseases, including autoimmune atrophic gastritis (AAG), coeliac disease (CoeD), inflammatory bowel disease (IBD), autoimmune hepatitis (AIH), primary sclerosing cholangitis (PSC), primary biliary cholangitis (PBC) and autoimmune pancreatitis (AIP), has led to a deeper awareness of the clinical management of these conditions [
      • Di Sabatino A.
      • Lenti M.V.
      • Giuffrida P.
      • et al.
      New insights into immune mechanisms underlying autoimmune diseases of the gastrointestinal tract.
      ,
      • Doherty D.G.
      Immunity, tolerance and autoimmunity in the liver: a comprehensive review.
      ,
      • Kamisawa T.
      • Chari S.T.
      • Lerch M.M.
      • et al.
      Recent advances in autoimmune pancreatitis: type 1 and type 2.
      ,
      • Di Sabatino A.
      • Corazza G.R.
      Coeliac disease.
      ]. In particular, serum antibodies have increased our diagnostic power in most of the aforementioned disorders (Table 1, Table 2), although their misuse has often led to diagnostic mistakes thus generating a number of controversies regarding their accuracy and appropriate use in real life. Fig. 1 shows the accuracy of serum antibodies according to the figures commonly reported in the literature.
      Table 1Serum antibody biomarkers of immune-mediated gastrointestinal disorders.
      AntibodyAcronymDiseaseTargetDetection method
      Anti-gastric parietal cellPCAAutoimmune atrophic gastritisH+/K+ ATPaseELISA
      Anti-intrinsic factorIFAIntrinsic factorELISA, IB
      Anti-tissue transglutaminase IgATTACoeliac diseaseTissue transglutaminaseELISA, CLIA
      Anti-endomysial IgAEMATissue transglutaminaseIF
      Anti-deamidated gliadin peptide IgADGPDeamidated gliadin-related peptideELISA
      Anti-enterocyteEAAutoimmune enteropathyEnterocyteIF
      Anti-Saccharomyces cerevisiaeASCACrohn’s diseaseYeast mannanIF, ELISA
      Perinuclear anti-neutrophil cytoplasmicpANCAUlcerative colitisNeutrophil cytoplasmIF
      Abbreviations: CLIA, chemiluminescence immunoassay; ELISA, enzyme linked immunosorbent assay; IB, immunoblot immunoassay; IF, immunofluorescence; Ig, immunoglobulin; tRNA, transfer ribonucleic acid; UGA, uracil–guanine–adenine.
      Table 2Serum antibody biomarkers of immune-mediated liver disorders.
      AntibodyAcronymDiseaseTargetDetection method
      Anti-nuclearANAAutoimmune hepatitisHeterogeneousIF
      Anti-smooth muscleSMAFilamentous actinIF
      Anti-liver kidney microsomalLKMCytochrome P450IF
      Anti-soluble liver antigen/liver-pancreasSLA/LPUGA serine tRNA-associated protein complexELISA
      Anti-liver cytosol 1LC1Formimino-transferase cyclodeaminase (FTCD)IF
      Perinuclear anti-neutrophil cytoplasmicpANCAPrimary sclerosing cholangitisNeutrophil cytoplasmIF
      Anti-mitochondrialAMAPrimary biliary cholangitisMitochondriaIF
      Immunoglobulin G4IgG4Autoimmune pancreatitisPleiotropicNephelometry
      Abbreviations: ELISA, enzyme linked immunosorbent assay; IF, immunofluorescence; Ig, immunoglobulin; tRNA, transfer ribonucleic acid; UGA,uracil–guanine–adenine.
      Figure thumbnail gr1
      Fig. 1Schematic representation of the accuracy of the most commonly used serum antibodies in the diagnosis of immune-mediated gastrointestinal and liver diseases. Accuracy is calculated as the average of sensitivity and specificity by using the best available tests in the literature. AEA, anti-enterocyte antibody; AGA, anti-gliadin antibody; AMA, anti-mitochondrial antibody; ANA, anti-nuclear antibody; ASCA, anti-Saccharomyces cerevisiae antibody; DGP, anti-deamidated gliadin peptide antibody; EMA, anti-endomysial antibody; GCA, anti-goblet cell antibody; IFA, anti-intrinsic factor antibody; Ig, immunoglobulin; LC1, anti-liver cytosol 1 antibody; LKM1, anti-liver kidney microsomal antibody 1; pANCA, perinuclear anti-neutrophil cytoplasmic antibody; PCA, anti-gastric parietal cell antibody; SLA/LP, anti-soluble liver antigen/liver-pancreas antibody; TTA, anti-tissue transglutaminase antibody.
      On this basis, we aimed to critically re-evaluate the usefulness of serum antibodies as biomarkers in immune-mediated gastrointestinal and liver disorders, and to discuss both their pitfalls and merits. For clarity, we decided to divide the review and discussion by diseases instead of by biomarkers, even if serum antibodies are the core of the review.

      2. Autoimmune atrophic gastritis

      AAG is an organ-specific disease which affects the corpus-fundus mucosa of the stomach, causing hypo-achlorhydria, deficiency of vitamin B12 and iron [
      • Dixon M.F.
      • Genta R.M.
      • Yardley J.H.
      • et al.
      Classification and grading of gastritis. The updated Sydney System. International Workshop on the Histopathology of Gastritis, Houston 1994.
      ,
      • Toh B.H.
      • Chan J.
      • Kyaw T.
      • et al.
      Cutting edge issues in autoimmune gastritis.
      ], and may predispose to gastric adenocarcinoma or type I neuroendocrine tumour [
      • Neumann W.L.
      • Coss E.
      • Rugge M.
      • Genta R.M.
      Autoimmune atrophic gastritis—pathogenesis, pathology and management.
      ,
      • Hsing A.W.
      • Hansson L.E.
      • McLaughlin J.K.
      • et al.
      Pernicious anemia and subsequent cancer. A population-based cohort study.
      ]. Specific clinical symptoms may be absent for many years [
      • Miceli E.
      • Lenti M.V.
      • Padula D.
      • et al.
      Common features of patients with autoimmune atrophic gastritis.
      ], and anti-parietal cell antibodies (PCA) and anti-intrinsic factor antibodies (IFA) could be potentially helpful in the diagnosis of this condition (Table 1) [
      • Toh B.H.
      Pathophysiology and laboratory diagnosis of pernicious anemia.
      ,
      • Lenti M.V.
      • Miceli E.
      • Padula D.
      • et al.
      The challenging diagnosis of autoimmune atrophic gastritis.
      ].
      PCA are directed against the α and β subunit of gastric H+/K+ adenosine triphosphatase [
      • Karlsson F.A.
      • Burman P.
      • Lööf L.
      • et al.
      Major parietal cell antigen in autoimmune gastritis with pernicious anemia is the acid-producing H+,K+-adenosine triphosphatase of the stomach.
      ,
      • Toh B.H.
      • Gleeson P.A.
      • Simpson R.J.
      • et al.
      The 60- to 90-kDa parietal cell autoantigen associated with autoimmune gastritis is a beta subunit of the gastric H+/K(+)-ATPase (proton pump).
      ,
      • Callaghan J.M.
      • Khan M.A.
      • Alderuccio F.
      • et al.
      Alpha and beta subunits of the gastric H+/K+-ATPase are concordantly targeted by parietal cell autoantibodies associated with autoimmune gastritis.
      ], and they can be identified by either immunofluorescence or enzyme-linked immunosorbent assay (ELISA), the latter being more accurate than the former [
      • Lahner E.
      • Norman G.L.
      • Severi C.
      • et al.
      Reassessment of intrinsic factor and parietal cell autoantibodies in atrophic gastritis with respect to cobalamin deficiency.
      ,
      • Toh B.H.
      • Kyaw T.
      • Taylor R.
      • et al.
      Parietal cell antibody identified by ELISA is superior to immunofluorescence, rises with age and is associated with intrinsic factor antibody.
      ]. How to interpret serum PCA positivity in the absence of gastric atrophy is still under debate [
      • Tozzoli R.
      • Kodermaz G.
      • Perosa A.R.
      • et al.
      Autoantibodies to parietal cells as predictors of atrophic body gastritis: a five-year prospective study in patients with autoimmune thyroid diseases.
      ,
      • Alonso N.
      • Granada M.L.
      • Soldevila B.
      • et al.
      Serum autoimmune gastritis markers, pepsinogen I and parietal cell antibodies, in patients with type 1 diabetes mellitus: a 5-year prospective study.
      ,
      • Rusak E.
      • Chobot A.
      • Krzywicka A.
      • et al.
      Anti-parietal cell antibodies—diagnostic significance.
      ]. We recently followed-up 58 patients with serum PCA positivity and normal gastric mucosa, and we observed that thirteen of them subsequently developed atrophy over a median 30-month follow-up period [
      • Lenti M.V.
      • Padula D.
      • Dequarti A.
      • et al.
      Potential autoimmune atrophic gastritis.
      ]. Of course, further studies are needed to verify whether the isolated PCA positivity could be considered a hallmark of “potential AAG”. A few considerations regarding the value of PCA in clinical practice should be made. Firstly, there is evidence from a single study [
      • Tozzoli R.
      • Kodermaz G.
      • Perosa A.R.
      • et al.
      Autoantibodies to parietal cells as predictors of atrophic body gastritis: a five-year prospective study in patients with autoimmune thyroid diseases.
      ] that serum PCA titres may fluctuate along the natural course of AAG, becoming negative in patients with longstanding disease, thus affecting PCA accuracy in late AAG. In these cases, if the clinical suspicion is high, other laboratory parameters and histology should be taken into account before ruling out AAG diagnosis. In particular, in a previous study we designed and validated a laboratory score model that evaluates serum basal 17-gastrin, haemoglobin and mean cell volume, able to detect AAG with a high accuracy [
      • Miceli E.
      • Padula D.
      • Lenti M.V.
      • et al.
      A laboratory score in the diagnosis of autoimmune atrophic gastritis: a prospective study.
      ]. Furthermore, the concern that Helicobacter pylori infection might affect PCA accuracy [
      • Faller G.
      • Winter M.
      • Steininger H.
      • et al.
      Decrease of antigastric autoantibodies in Helicobacter pylori gastritis after cure of infection.
      ,
      • Amedei A.
      • Bergman M.P.
      • Appelmelk B.J.
      • et al.
      Molecular mimicry between Helicobacter pylori antigens and h+, k+-adenosine triphosphatase in human gastric autoimmunity.
      ] was not confirmed by a recent large study [
      • Zhang Y.
      • Weck M.N.
      • Schöttker B.
      • et al.
      Gastric parietal cell antibodies, Helicobacter pylori infection, and chronic atrophic gastritis: evidence from a large population-based study in Germany.
      ]. Although there are no studies assessing the performance of PCA in a case-finding strategy, the relevant association of AAG with other autoimmune disorders [
      • Miceli E.
      • Lenti M.V.
      • Padula D.
      • et al.
      Common features of patients with autoimmune atrophic gastritis.
      ,
      • Tozzoli R.
      • Kodermaz G.
      • Perosa A.R.
      • et al.
      Autoantibodies to parietal cells as predictors of atrophic body gastritis: a five-year prospective study in patients with autoimmune thyroid diseases.
      ,
      • Alonso N.
      • Granada M.L.
      • Soldevila B.
      • et al.
      Serum autoimmune gastritis markers, pepsinogen I and parietal cell antibodies, in patients with type 1 diabetes mellitus: a 5-year prospective study.
      ,
      • Zelissen P.M.
      • Bast E.J.
      • Croughs R.J.
      Associated autoimmunity in Addison's disease.
      ,
      • Zauli D.
      • Tosti A.
      • Biasco G.
      • et al.
      Prevalence of autoimmune atrophic gastritis in vitiligo.
      ] might make it worth using serology to screen patients with autoimmune thyroiditis, type I diabetes, Addison’s disease and vitiligo. In addition, the value of PCA in patients with megaloblastic anaemia has been widely investigated and confirmed [
      • Hershko C.
      • Ronson A.
      • Souroujon M.
      • et al.
      Variable hematologic presentation of autoimmune gastritis: age-related progression from iron deficiency to cobalamin depletion.
      ,
      • Bizzaro N.
      • Antico A.
      Diagnosis and classification of pernicious anemia.
      ].
      With regard to IFA, they can be classified in two types, i.e. type I preventing vitamin B12 from binding to intrinsic factor [
      • Guéant J.L.
      • Safi A.
      • Aimone-Gastin I.
      • et al.
      Autoantibodies in pernicious anemia type I patients recognize sequence 251–256 in human intrinsic factor.
      ], and type II preventing the ileal absorption of vitamin B12–intrinsic factor complex [
      • Samloff I.M.
      • Kleinman M.S.
      • Turner M.D.
      • et al.
      Blocking and binding antibodies to intrinsic factor and parietal cell antibody in pernicious anemia.
      ]. IFA, even detected by ELISA, due to their low sensitivity (<30%) have limited clinical usefulness. However, in patients presenting with pernicious anaemia, a late finding in AAG [
      • Hershko C.
      • Ronson A.
      • Souroujon M.
      • et al.
      Variable hematologic presentation of autoimmune gastritis: age-related progression from iron deficiency to cobalamin depletion.
      ], IFA may have a role in increasing diagnostic accuracy when combined with PCA [
      • Lahner E.
      • Norman G.L.
      • Severi C.
      • et al.
      Reassessment of intrinsic factor and parietal cell autoantibodies in atrophic gastritis with respect to cobalamin deficiency.
      ].

      3. Coeliac disease

      The discovery of serum antibodies specific for CoeD is certainly the key factor that revolutionized our knowledge of this condition (Table 1). Formerly, CoeD was considered to be a rare disease, affecting almost exclusively children, and to be taken into account only in the case of severe malabsorption symptoms. Thanks to “coeliac serology” we know that CoeD is very frequent, it affects adults as much as children, and its clinical presentation is extremely variable [
      • Di Sabatino A.
      • Corazza G.R.
      Coeliac disease.
      ,
      • Biagi F.
      • Klersy C.
      • Balduzzi D.
      • et al.
      Are we not over-estimating the prevalence of coeliac disease in the general population.
      ].
      The first serum antibodies discovered to be specific for CoeD were R1 reticulin antibodies, identified in 1971 [
      • Seah P.P.
      • Fry L.
      • Hoffbrand A.V.
      • et al.
      Tissue antibodies in dermatitis herpetiformis and adult coeliac disease.
      ]. They were detected by standard indirect immunofluorescence on cryostat section of rodent tissues, stomach, liver and kidney. Although some authors reported remarkably good levels of sensitivity and specificity [
      • Mäki M.
      • Hällström O.
      • Vesikari T.
      • et al.
      Evaluation of a serum IgA-class reticulin antibody test for the detection of childhood celiac disease.
      ], in everyday clinical practice the results were more disappointing and they never became a test used world-wide. The era of coeliac serology kicked off in the early 1980s with the discovery of ELISA anti-gliadin antibodies (AGA) and immunofluorescent anti-endomysial antibodies (EMA) [
      • O'Farrelly C.
      • Kelly J.
      • Hekkens W.
      • et al.
      Alpha gliadin antibody levels: a serological test for coeliac disease.
      ,
      • Chorzelski T.P.
      • Sulej J.
      • Tchorzewska H.
      • et al.
      IgA class endomysium antibodies in dermatitis herpetiformis and coeliac disease.
      ]. In 1997, the discovery of the role of tissue transglutaminase 2 (TG2) in the pathogenesis of CoeD made it possible not only to detect EMA by means of an ELISA technique, i.e. anti-tissue transglutaminase antibodies (TTA), but also to detect deamidated gliadin peptide antibodies (DGP) [
      • Dieterich W.
      • Ehnis T.
      • Bauer M.
      • et al.
      Identification of tissue transglutaminase as the autoantigen of celiac disease.
      ,
      • Aleanzi M.
      • Demonte A.M.
      • Esper C.
      • et al.
      Celiac disease: antibody recognition against native and selectively deamidated gliadin peptides.
      ]. Immunofluorescence IgA anti-actin and ELISA anti-glutenin antibodies were also investigated [
      • Clemente M.G.
      • Musu M.P.
      • Frau F.
      • et al.
      Immune reaction against the cytoskeleton in coeliac disease.
      ,
      • Ellis H.J.
      • Lozano-Sanchez P.
      • Bermudo C.
      • et al.
      Antibodies to wheat high molecular weight glutenin sub-units in patients with coeliac disease.
      ]. A total of seven different types of coeliac antibodies have been investigated so far. However, it must be stressed that nowadays only EMA, TTA and DGP are the antibodies that need to be taken into account. Anti-reticulin and AGA are now obsolete, have exhausted their role and should be abandoned. Anti-actin and anti-glutenin antibodies never managed to get beyond the experimental level and enter into clinical practice, although IgA anti-actin antibodies were shown to correlate with histological damage.
      EMA are directed against TG2 in soft connective tissues surrounding smooth muscle fibres, the so-called endomysium. They are detected with traditional immunofluorescence on cryostat sections of monkey oesophagus, monkey jejunum or human umbilical cord. When detected on monkey jejunum they are defined jejunum antibodies. Although the very first studies clearly showed that EMA of IgA class are the relevant ones and IgG EMA should be taken into account only in patients with IgA deficiency [
      • Chorzelski T.P.
      • Sulej J.
      • Tchorzewska H.
      • et al.
      IgA class endomysium antibodies in dermatitis herpetiformis and coeliac disease.
      ,
      • Beutner E.H.
      • Kumar V.
      • Chorzelski T.P.
      • et al.
      IgG endomysial antibodies in IgA-deficient patient with coeliac disease.
      ], it is nowadays quite common to have patients tested for both IgA and IgG EMA “in case there is an unknown IgA deficiency”. The problem with this strategy is that the sensitivity and specificity of IgG EMA in subjects with normal IgA levels are rather low. So, immunocompetent subjects with false positive IgG EMA are more common than patients with unknown IgA deficiency and true positive IgG EMA. Therefore, testing for total IgA should be part of the serological search for CoeD, and only when total IgA deficiency is detected should IgG EMA be performed [
      • Ludvigsson J.F.
      • Bai J.C.
      • Biagi F.
      • et al.
      Diagnosis and management of adult coeliac disease—guidelines from the British Society of Gastroenterology.
      ,
      • Singh K.
      • Chang C.
      • Gershwin M.E.
      IgA deficiency and autoimmunity.
      ]. The sensitivity of EMA has been reported to be around 95%, and since EMA specificity is close to 100%, a positive patient with a normal duodenal biopsy implies a diagnosis of potential CoeD [
      • Ferguson A.
      • Arranz E.
      • O’Mahony S.
      Clinical and pathological spectrum of coeliac disease—active, silent, latent, potential.
      ].
      As stated before, TG2 is the antigen of EMA and this allowed TTA detection by means of an ELISA technique [
      • Dieterich W.
      • Ehnis T.
      • Bauer M.
      • et al.
      Identification of tissue transglutaminase as the autoantigen of celiac disease.
      ]. Therefore, although they are defined with two different names, EMA and TTA are exactly the same antibodies. Again, only TTA of IgA class have a diagnostic role and TTA of IgG class should be considered only in the case of IgA deficiency. An ELISA technique is obviously cheaper to perform and does not require specific training for the operator. However, we do not agree with those authors who suggest that EMA detection is subjective and operator-dependent, and that TTA are more reliable because they provide a numerical result [
      • Leffler D.A.
      • Schuppan D.
      Update on serologic testing in celiac disease.
      ]. An EMA positive pattern is not just “stronger” than a negative one but it is different. We could say that to distinguish positive EMA from negative ones it is like distinguishing the Eiffel tower from the leaning tower of Pisa: a glance is enough and we do not need any measurement, any number to distinguish between them!
      The sensitivity of TTA is maybe even higher than that of EMA but the specificity is not 100%. The main problem is represented by “low positive” TTA that are often unrelated with CoeD. We showed a few years ago that there is a very good relationship between TTA optical density and EMA titres, though this relationship tends to be weaker at low EMA titres and at low TTA optical density [
      • Biagi F.
      • Pezzimenti D.
      • Campanella J.
      • et al.
      Endomysial and tissue transglutaminase antibodies in coeliac sera: a comparison not influenced by previous serological testing.
      ]. Since, in our experience, low positive TTA are among the causes of misdiagnosing CoeD [
      • Biagi F.
      • Bianchi P.I.
      • Campanella J.
      • et al.
      The impact of misdiagnosing celiac disease at a referral centre.
      ], we strongly recommend that weak TTA should always be confirmed by EMA. In children, even strong TTA need to be confirmed by EMA according to the latest ESPGHAN criteria, which allow the diagnosis of CoeD without duodenal biopsy. This can be done providing that TTA are higher than 10 times the normal value, EMA are found positive in a second serum sample, HLA-DQ2 and/or DQ8 are positive, clear-cut symptoms consistent with CD are present, and there is a response to a gluten-free diet [
      • Husby S.
      • Koletzko S.
      • Korponay-Szabo I.R.
      • et al.
      European Society for Pediatric Gastroenterology, Hepatology, and Nutrition guidelines for the diagnosis of coeliac disease.
      ]. Finally, the observation that during an infectious disease TTA can be produced temporarily and independently of gluten further supports the importance of confirming TTA-positivity with EMA [
      • Ferrara F.
      • Quaglia S.
      • Caputo I.
      • et al.
      Anti-transglutaminase antibodies in non-coeliac children suffering from infectious diseases.
      ].
      As regards DGP, similarly to old AGA, both DGP of IgG and IgA class should be taken into account. Since the sensitivity of EMA/TTA tends to be lower in children below 3 years of age, DGP have been proposed as the serological tool of choice in this age group [
      • Leffler D.A.
      • Schuppan D.
      Update on serologic testing in celiac disease.
      ].
      The proper use of coeliac antibodies in adulthood should be based on the pre-test probability of CoeD. Screening of the general population, i.e. mass screening, should be performed with TTA first, followed by EMA on TTA-positive samples and then duodenal biopsy. In at risk groups with an expected prevalence of CoeD ranging from 5 to 10% (case-finding strategy), patients should undergo either EMA or TTA determination followed by duodenal biopsy in those who test positive. Finally, patients with frank symptoms of malabsorption and unexplained malnutrition should undergo upper endoscopy with duodenal biopsies in spite of the EMA/TTA result [
      • Ludvigsson J.F.
      • Bai J.C.
      • Biagi F.
      • et al.
      Diagnosis and management of adult coeliac disease—guidelines from the British Society of Gastroenterology.
      ,
      • Corrao G.
      • Corazza G.R.
      • Andreani M.L.
      • et al.
      Serological screening of coeliac disease: choosing the optimal procedure according to various prevalence values.
      ].
      Tons of papers have been written on the use of coeliac antibodies in the follow-up of CoeD and for checking gluten-free diet adherence. Although they are reported as a satisfactory tool in some papers [
      • Pietzak M.M.
      Follow-up of patients with celiac disease: achieving compliance with treatment.
      ,
      • Dipper C.R.
      • Maitra S.
      • Thomas R.
      • et al.
      Anti-tissue transglutaminase antibodies in the follow up of adult coeliac disease.
      ], they are not as reliable as they are for diagnosis in monitoring dietary adherence or histologic response [
      • Kaukinen K.
      • Sulkanen S.
      • Maki M.
      • et al.
      IgA-class transglutaminase antibodies in evaluating the efficacy of gluten-free diet in coeliac disease.
      ,
      • Troncone R.
      • Mayer M.
      • Spagnuolo F.
      • et al.
      Endomysial antibodies as unreliable marker for slight dietary transgressions in adolescents with coeliac disease.
      ,
      • Dickey W.
      • Hughes D.F.
      • McMillan S.A.
      Disappearance of endomysial antibodies in treated celiac disease does not indicate histological recovery.
      ,
      • Biagi F.
      • Campanella J.
      • Martucci S.
      • et al.
      A milligram of gluten a day keeps the mucosal recovery away.
      ]. Conversely, we showed that coeliac antibodies can persist despite strict dietary adherence and good histological response. More precisely, when histological response was used as the gold standard, the sensitivity and specificity of the serological response was 48% and 71%, respectively [
      • Biagi F.
      • Bianchi P.I.
      • Marchese A.
      • et al.
      A score that verifies adherence to a gluten-free diet: a cross-sectional, multicentre validation in real clinical life.
      ].
      Common variable immunodeficiency is a condition that can present subtotal villous atrophy that does not always respond to a gluten-free diet. So, proving that these patients are also affected by CoeD can be a real challenge. We have recently shown that CoeD serology has no role in these patients and can even be misleading [
      • Biagi F.
      • Bianchi P.I.
      • Zilli A.
      • et al.
      The significance of duodenal mucosal atrophy in patients with common variable immunodeficiency: a clinical and histopathologic study.
      ]. Therefore, the histological response to a gluten-free diet, together with the presence of DQ2 or DQ8 molecules, remains the only diagnostic criterion for CoeD in these patients.

      4. Autoimmune enteropathy

      Autoimmune enteropathy (AIE) is a chronic enteropathy first described in children [
      • Unsworth D.J.
      • Walker-Smith J.A.
      Autoimmunity in diarrhoeal disease.
      ] and then in adults [
      • Corazza G.R.
      • Biagi F.
      • Volta U.
      • et al.
      Autoimmune enteropathy and villous atrophy in adults.
      ]. According to Unsworth & Walker-Smith [
      • Unsworth D.J.
      • Walker-Smith J.A.
      Autoimmunity in diarrhoeal disease.
      ], the diagnosis had to be based on subtotal villous atrophy refractory to any dietary exclusion, anti-enterocyte antibodies (EA) and/or associated autoimmune conditions, and absence of significant immunodeficiency. EA are therefore the serological marker of this condition (Table 1). They are detected by indirect immunofluorescence on cryostat sections of monkey or human jejunum where they bind to the cytoplasm and, to a lesser extent, the brush border of villi and crypt enterocytes (Fig. 2).
      Figure thumbnail gr2
      Fig. 2Strong positivity of anti-enterocyte antibodies (white arrows) detected by indirect immunofluorescence on cryostat sections of monkey jejunum (brush border and enterocyte cytoplasm). Original magnification: ×250.
      AIE is really very rare. To figure out how rare it is, it should be sufficient to say that we described the first two adult cases in 1997 [
      • Corazza G.R.
      • Biagi F.
      • Volta U.
      • et al.
      Autoimmune enteropathy and villous atrophy in adults.
      ]. Since then we have been actively looking for an AIE that represents an important differential diagnosis with CoeD and its complications. Although we are a referral centre for CoeD and we use monkey jejunum on a regular basis to look for EMA, only three more patients have been diagnosed in the last 20 years. The rarity of the condition is therefore the first obstacle to estimate the accuracy of EA for AIE, but it is not the only one. A second problem is linked to the diagnostic criteria themselves. Although those originally proposed by Unsworth and Walker-Smith [
      • Unsworth D.J.
      • Walker-Smith J.A.
      Autoimmunity in diarrhoeal disease.
      ] work perfectly well for children, we are not sure that this is also true for adults. In children, refractory CoeD simply does not exist, and so there is no problem of differential diagnosis with AIE. This is obviously not the case in adults where refractoriness and other complications of CoeD are a major problem. Since associated autoimmune conditions are very frequent in CoeD, EA are the only tool that can be used to discriminate between adult AIE and refractory CoeD. So, sensitivity of EA would inevitably be 100%. After having tested serum samples from more than 2200 patients undergoing duodenal biopsy, we think that the specificity of EA for AIE is virtually 100%. In children, in whom the diagnosis does not require positive EA, the highest sensitivity (91%) was obtained in 12 children affected by immune dysregulation, polyendocrinopathy, enteropathy, or X-linked disease, which is a syndromic form of AIE [
      • Patey-Mariaud de Serre N.
      • Canioni D.
      • Ganousse S.
      • et al.
      Digestive histopathological presentation of IPEX syndrome.
      ]. However, EA specificity in AIE is still under debate, EA being said to be positive in more than two-thirds of human immunodeficiency virus-infected patients with chronic diarrhoea [
      • Martín-Villa J.M.
      • Camblor S.
      • Costa R.
      • Arnaiz-Villena A.
      Gut epithelial cell autoantibodies in AIDS pathogenesis.
      ]. We think that these discrepant results are due to the lack of immunofluorescent diagnostic criteria for EA. To look for EA is difficult. We would say that it is like distinguishing a black cat from a white one. It seems to be easy and indeed it is easy in the most obvious cases (Fig. 2), but sooner or later we will come across a grey cat, i.e. an intermediate pattern difficult to define as either black or white. So, on the basis of our experience, we recommend that only very bright patterns like those in Fig. 2 should be considered to be positive EA. Weak fluorescent staining of enterocytes, especially in the crypts, are on the other hand very common and totally non-specific. High EA titres do not correlate with histological severity and they might appear late during AIE natural history [
      • Walker-Smith J.A.
      Coeliac disease and autoimmune enteropathy.
      ,
      • Singhi A.D.
      • Goyal A.
      • Davison J.M.
      • et al.
      Pediatric autoimmune enteropathy: an entity frequently associated with immunodeficiency disorders.
      ,
      • Walker-Smith J.A.
      • Unsworth D.J.
      • Hutchins P.
      • et al.
      Autoantibodies against gut epithelium in a child with small intestinal enteropathy.
      ,
      • Savilahti E.
      • Pelkonen P.
      • Holmberg C.
      • et al.
      Fatal unresponsive villous atrophy of the jejunum, connective tissue disease and diabetes in a girl with intestinal epithelial cell antibody.
      ]. Finally, whether EA have a pathogenic role or they represent only a secondary phenomenon is still under debate.
      Other authors based the diagnosis of AIE on positive anti-goblet cell antibodies (GCA) [
      • Akram S.
      • Murray J.A.
      • Pardi D.S.
      • et al.
      Adult autoimmune enteropathy: Mayo Clinic Rochester experience.
      ]. We have clearly shown that GCA are totally non-specific, and are very frequent even in controls with normal villi [
      • Biagi F.
      • Bianchi P.I.
      • Trotta L.
      • et al.
      Anti-goblet cell antibodies for the diagnosis of autoimmune enteropathy?.
      ]. Their use for the diagnosis of AIE should be discouraged.

      5. Inflammatory bowel disease

      Serum antibodies detectable in IBD patients can be classified into three main groups, namely autoantibodies directed against autoantigens [
      • Di Sabatino A.
      • Lenti M.V.
      • Giuffrida P.
      • et al.
      New insights into immune mechanisms underlying autoimmune diseases of the gastrointestinal tract.
      ], anti-microbial antibodies against the luminal microbiota [
      • Dotan I.
      • Fishman S.
      • Dgani Y.
      • et al.
      Antibodies against laminaribioside and chitobioside are novel serologic markers in Crohn's disease.
      ], and anti-drug antibodies (ADA), which target anti-tumour necrosis factor (TNF) antibodies or anti-α4β7 antibody vedolizumab [
      • Nanda K.S.
      • Cheifetz A.S.
      • Moss A.C.
      Impact of antibodies to infliximab on clinical outcomes and serum infliximab levels in patients with inflammatory bowel disease (IBD): a meta-analysis.
      ,
      • Colombel J.F.
      • Sands B.E.
      • Rutgeerts P.
      • et al.
      The safety of vedolizumab for ulcerative colitis and Crohn's disease.
      ]. The first class includes perinuclear anti-neutrophil cytoplasmic antibodies (pANCA), which exhibit a non-granular distribution [
      • Saxon A.
      • Shanahan F.
      • Landers C.
      • et al.
      A distinct subset of antineutrophil cytoplasmic antibodies is associated with inflammatory bowel disease.
      ] and have a sensitivity of 52% and a specificity of 91% in differentiating ulcerative colitis (UC) from Crohn’s disease (CrD) [
      • Prideaux L.
      • De Cruz P.
      • Ng S.C.
      • et al.
      Serological antibodies in inflammatory bowel disease: a systematic review.
      ]. Moreover, the small group of pANCA-positive CrD patients have endoscopic, pathological and clinical features of left-sided colitis, thus indicating a predominant UC phenotype [
      • Vasiliauskas E.A.
      • Plevy S.E.
      • Landers C.J.
      • et al.
      Perinuclear antineutrophil cytoplasmic antibodies in patients with Crohn's disease define a clinical subgroup.
      ]. Among the subgroup of pANCA-positive IBD patients, the anti-bacterial flagellin CBir1 antibodies are expressed in 44% of CrD patients and only in 4% in UC cases, and this may help in discriminating UC from CrD [
      • Targan S.R.
      • Landers C.J.
      • Yang H.
      • et al.
      Antibodies to CBir1 flagellin define a unique responsethat is associated independently with complicated Crohn's disease.
      ]. Negativity for pANCA in UC predicts an early response to the anti-TNF monoclonal antibody infliximab [
      • Jürgens M.
      • Laubender R.P.
      • Hartl F.
      • et al.
      Disease activity, ANCA, and IL23R genotype status determine early response to infliximab in patients with ulcerative colitis.
      ], while its positivity predicts the development of chronic pouchitis after ileal pouch-anal anastomosis [
      • Singh S.
      • Sharma P.K.
      • Loftus Jr., E.V.
      • et al.
      Meta-analysis: serological markers and the risk of acute and chronic pouchitis.
      ].
      In a meta-analysis on 14 studies performed in Europe, Israel and Canada [
      • Kaul A.
      • Hutfless S.
      • Liu L.
      • et al.
      Serum anti-glycan antibody biomarkers for inflammatory bowel disease diagnosis and progression: a systematic review and meta-analysis.
      ], serum levels of the anti-glycan anti-Saccharomyces cerevisiae antibodies (ASCA) have a sensitivity of 56% and a specificity of 88% in discriminating CrD from UC. ASCA-positive CrD patients have a higher risk of disabling disease, including stricturing and penetrating behaviour, earlier onset and perianal disease, resulting in an increased need for surgery [
      • Kaul A.
      • Hutfless S.
      • Liu L.
      • et al.
      Serum anti-glycan antibody biomarkers for inflammatory bowel disease diagnosis and progression: a systematic review and meta-analysis.
      ,
      • Zhang Z.
      • Li C.
      • Zhao X.
      • et al.
      Anti-Saccharomyces cerevisiae antibodies associate with phenotypes and higher risk for surgery in Crohn's disease: a meta-analysis.
      ]. A recent study showed that faecal ASCA have the same sensitivity (52%) but a lower specificity (71%) compared to serum ASCA (87%) in a paediatric cohort of 83 CrD patients [
      • Tang V.
      • Valim C.
      • Moman R.
      • et al.
      Assessment of fecal ASCA measurement as a biomarker of Crohn disease in pediatric patients.
      ]. Apart from ASCA, five further serum anti-glycan antibodies, i.e. anti-chitobioside carbohydrate IgA (ACCA), anti-mannobioside carbohydrate IgG (AMCA), anti-laminaribioside IgG (ALCA), anti-laminarin carbohydrate antibodies (anti-L), and anti-chitin carbohydrate (anti-C), have been detected in the serum of IBD patients. It has been shown that serum levels of all the anti-glycan antibodies remain stable over six years of follow-up in most patients [
      • Rieder F.
      • Dirmeier A.
      • Strauch U.
      • et al.
      Association of the novel serologic anti-glycan antibodies anti-laminarin and anti-chitin with complicated Crohn’s disease behavior.
      ]. In general, each anti-glycan antibody has a good specificity and positive predictive value in discriminating CrD from UC [
      • Rieder F.
      • Dirmeier A.
      • Strauch U.
      • et al.
      Association of the novel serologic anti-glycan antibodies anti-laminarin and anti-chitin with complicated Crohn’s disease behavior.
      ]. CrD patients positive for ASCA, AMCA and anti-L have a higher risk of complications, whereas anti-C is strongly associated with IBD-related surgery [
      • Rieder F.
      • Dirmeier A.
      • Strauch U.
      • et al.
      Association of the novel serologic anti-glycan antibodies anti-laminarin and anti-chitin with complicated Crohn’s disease behavior.
      ]. ALCA or ACCA were detected in 44% of a small cohort of ASCA-negative CrD patients from Israel, increasing the sensitivity and specificity up to 77% and 90%, respectively, in CrD patients positive for at least one out of the three antibodies, ALCA, ACCA and ASCA [
      • Kaul A.
      • Hutfless S.
      • Liu L.
      • et al.
      Serum anti-glycan antibody biomarkers for inflammatory bowel disease diagnosis and progression: a systematic review and meta-analysis.
      ]. On the other hand, positivity for anti-Escherichia coli outer membrane protein C antibodies (anti-OmpC), which are frequently associated with a disabling disease course and surgery in CrD [
      • Xiong Y.
      • Wang G.Z.
      • Zhou J.Q.
      • et al.
      Serum antibodies to microbial antigens for Crohn's disease progression: a meta-analysis.
      ], are not associated with IBD in ASCA-negative individuals [
      • Davis M.K.
      • Andres J.M.
      • Jolley C.D.
      • et al.
      Antibodies to Escherichia coli outer membrane porin C in the absence of anti-Saccharomyces cerevisiae antibodies and anti-neutrophil cytoplasmic antibodies are an unreliable marker of Crohn disease and ulcerative colitis.
      ]. A recent study on twins with CrD showed a high degree of similarity in anti-OmpC and in anti-Pseudomonas fluorescens-associated peptide I2 antibodies (anti-I2) in discordant monozygotic twin pairs, but not in discordant dizygotic twin pairs, suggesting that both anti-OmpC and anti-I2 stand for a genetically determined loss of tolerance [
      • Amcoff K.
      • Joossens M.
      • Pierik M.J.
      • et al.
      Concordance in anti-OmpC and anti-I2 indicate the influence of genetic predisposition: results of a European Study of Twins with Crohn's Disease.
      ]. In addition, over six years before the diagnosis in 65% of CrD patients, at least one of ASCA IgA, ASCA IgG, anti-OmpC, anti-CBir1, and two other anti-flagellin antibodies, anti-Fla2 and anti-FlaX, is positive [
      • Choung R.S.
      • Princen F.
      • Stockfisch T.P.
      • et al.
      Serologic microbial associated markers can predict Crohn's disease behaviour years before disease diagnosis.
      ]. Similarly, a panel of serum antibodies, including pANCA, ASCA IgA, ASCA IgG, anti-OmpC, anti-CBir1, has been shown to predict the diagnosis of both CrD and UC in the previous four years [
      • van Schaik F.D.
      • Oldenburg B.
      • Hart A.R.
      • et al.
      Serological markers predict inflammatory bowel disease years before the diagnosis.
      ]. Anti-microbial antibodies are clinically useful in predicting a disabling disease course in CrD, but not in discriminating between stricturing and non-stricturing phenotypes [
      • Giuffrida P.
      • Pinzani M.
      • Corazza G.R.
      • et al.
      Biomarkers of intestinal fibrosis—one step towards clinical trials for stricturing inflammatory bowel disease.
      ].
      Due to its chimeric nature and consequent high immunogenicity, the monoclonal anti-TNF antibody infliximab may induce the development of ADA, generally within the first 12 months of therapy [
      • Ungar B.
      • Chowers Y.
      • Yavzori M.
      • et al.
      The temporal evolution of antidrug antibodies in patients with inflammatory bowel disease treated with infliximab.
      ]. ADA, whose appearance may be delayed by concomitant administration of immunosuppressant drugs (i.e. thiopurines), induce and frequently precede the loss of response to infliximab [
      • Ungar B.
      • Chowers Y.
      • Yavzori M.
      • et al.
      The temporal evolution of antidrug antibodies in patients with inflammatory bowel disease treated with infliximab.
      ]. Conversely, transient ADA may appear randomly during infliximab therapy, but have little clinical impact [
      • Ungar B.
      • Chowers Y.
      • Yavzori M.
      • et al.
      The temporal evolution of antidrug antibodies in patients with inflammatory bowel disease treated with infliximab.
      ]. Although ADA against the fully human anti-TNF antibody adalimumab are not so frequent in IBD patients (from 2 to 44%) [
      • Sandborn W.J.
      • Rutgeerts P.
      • Enns R.
      • et al.
      Adalimumab induction therapy for Crohn disease previously treated with infliximab: a randomized trial.
      ,
      • Wang S.L.
      • Hauenstein S.
      • Ohrmund L.
      • et al.
      Monitoring of adalimumab and antibodies-to-adalimumab levels in patient serum by the homogeneous mobility shift assay.
      ], their titres inversely correlate with adalimumab concentration and, hence, high amounts of ADA are associated with disease activity due to their drug inactivation and clearance in CrD [
      • Mazor Y.
      • Almog R.
      • Kopylov U.
      • et al.
      Adalimumab drug and antibody levels as predictors of clinical and laboratory response in patients with Crohn's disease.
      ]. In the case of loss of response, a number of different strategies may be adopted on the basis of the presence or absence of ADA positivity and according to drug trough levels (Fig. 3) [
      • Yanai H.
      • Lichtenstein L.
      • Assa A.
      • et al.
      Levels of drug and antidrug antibodies are associated with outcome of interventions after loss of response to infliximab or adalimumab.
      ]. However, it has been proposed that adequate serum trough levels (3–7 μg/ml) do not necessarily reflect translated amounts of anti-TNF agents sufficient to neutralize all the TNF present in IBD mucosa [
      • Yarur A.J.
      • Jain A.
      • Sussman D.A.
      • et al.
      The association of tissue anti-TNF drug levels with serological and endoscopic disease activity in inflammatory bowel disease: the ATLAS study.
      ]. Until now, no study has been conducted on ADA directed against golimumab in UC patients. Similarly, treatment with the humanized monoclonal antibody vedolizumab is associated with the development of ADA in 4% of patients [
      • Colombel J.F.
      • Sands B.E.
      • Rutgeerts P.
      • et al.
      The safety of vedolizumab for ulcerative colitis and Crohn's disease.
      ]. According to our recent demonstration that increased amounts of matrix metalloprotease-3 and -12 in active IBD mucosa may cleave not only anti-TNF agents but also endogenous IgG at hinge region level, raised serum levels of matrix metalloproteinase-cleaved endogenous IgG and anti-hinge autoantibodies against neo-epitopes of cleaved IgG may be considered as predictors of poor response to anti-TNF therapy [
      • Biancheri P.
      • Brezski R.J.
      • Di Sabatino A.
      • et al.
      Proteolytic cleavage and loss of function of biologic agents that neutralize tumor necrosis factor in the mucosa of patients with inflammatory bowel disease.
      ].
      Figure thumbnail gr3
      Fig. 3Algorithm for optimization of anti-tumour necrosis factor (TNF) therapy in inflammatory bowel disease patients depending on serum anti-TNF antibody levels (therapeutic range: 3–7 μg/ml) and the presence or absence of anti-drug antibodies (ADA).
      In conclusion, none of the aforementioned autoantibodies currently have enough accuracy to justify their use in day-to-day clinical practice, whereas ADA appear to be a useful tool in the clinical management of IBD patients exposed to biologic agents.

      6. Autoimmune liver disease

      Autoimmune serology has a central role in the diagnosis and classification of autoimmune liver disease (Table 2). However, there are a number of controversial issues as most autoantibodies characteristically associated with autoimmune liver disease lack specificity and pathogenic significance. Indirect immunofluorescence is the main technique for routine autoantibody testing [
      • Vergani D.
      • Alvarez F.
      • Bianchi F.B.
      • et al.
      Liver autoimmune serology: a consensus statement from the committee for autoimmune serology of the International Autoimmune Hepatitis Group.
      ]. It is based on the use of a freshly frozen rodent substrate that usually includes kidney, liver and stomach, a combination that allows the simultaneous detection of anti-nuclear antibodies (ANA), anti-smooth muscle antibodies (SMA), anti-liver kidney microsomal antibody (LKM) 1, anti-mitochondrial antibody (AMA), and anti-liver cytosol 1 (LC1), if LKM1 is absent. In adults, significant titres are ≥1:40 dilution by indirect immunofluorescence. In children, titres of 1:20 for ANA or SMA and 1:10 for LKM1 are supportive of the diagnosis of AIH when used in combination with other laboratory tests and clinical features suggestive of the disease. However, the indirect immunofluorescence technique has many drawbacks, as it is time consuming, requires an experienced observer, and is insufficiently standardized. Commercially available substrates are used in routine laboratory practice, but their quality varies. These substrates are treated with fixatives in order to lengthen their shelf life, but this also causes enhanced background staining, which might cause difficulties in the interpretation of fluorescence patterns and can explain the low reproducibility of the test. Methods other than indirect immunofluorescence, such as ELISA or immunoblotting, are gaining popularity. This shift has been supported by the introduction of assays based on recombinant/purified target antigens, such as cytochrome P 450 2D6-CYP2D6, formimino-transferase cyclo deaminase (FTCD), soluble liver antigen/liver pancreas, and filamentous actin-F-actin. However, the use of ELISA as the sole primary screening test is inappropriate because there is no useful combination of molecular specificities for a dependable detection of ANA and SMA, while the results are interchangeable with indirect immunofluorescence for those autoantibodies (AMA, LKM1 and LC1) whose target antigen has been identified at molecular level [
      • Kerkar N.
      • Ma Y.
      • Davies E.T.
      • et al.
      Detection of liver–kidney microsomal type 1 antibody using molecular based immunoassay.
      ,
      • Bogdanos D.P.
      • Invernizzi P.
      • Mackay I.R.
      • et al.
      Autoimmune liver serology; current diagnostic and clinical challenges.
      ].
      Autoantibody titres and specificity may vary during the course of the disease, and seronegative individuals at diagnosis may express the conventional autoantibodies later in the disease course [
      • Gassert D.J.
      • Garcia H.
      • Tanaka K.
      • et al.
      Corticosteroid-responsive cryptogenic chronic hepatitis: evidence for seronegative autoimmune hepatitis.
      ,
      • Potthoff A.
      • Deterding K.
      • Trautwein C.
      • et al.
      Steroid treatment for severe acute cryptogenic hepatitis.
      ]. In these patients, repeated testing allows autoantibody detection, thus correct disease diagnosis and classification [
      • Vergani D.
      • Alvarez F.
      • Bianchi F.B.
      • et al.
      Liver autoimmune serology: a consensus statement from the committee for autoimmune serology of the International Autoimmune Hepatitis Group.
      ,
      • Bogdanos D.P.
      • Invernizzi P.
      • Mackay I.R.
      • et al.
      Autoimmune liver serology; current diagnostic and clinical challenges.
      ,
      • Alvarez F.
      • Berg P.A.
      • Bianchi F.B.
      • et al.
      International Autoimmune Hepatitis Group Report: review of criteria for diagnosis of autoimmune hepatitis.
      ]. In adulthood, autoantibody titres correlate poorly with disease activity, clinical course and treatment response [
      • Czaja A.J.
      Behavior and significance of autoantibodies in type 1 autoimmune hepatitis.
      ], and do not need to be monitored regularly, unless a significant change in the clinical phenotype appears. On the contrary, in childhood autoantibody titres may be useful biomarkers of disease activity, and they can be used to monitor treatment response [
      • Gregorio G.V.
      • McFarlane B.
      • Bracken P.
      • et al.
      Organ and non-organ specific autoantibody titres and IgG levels as markers of disease activity: a longitudinal study in childhood autoimmune liver disease.
      ]. In particular, LC1 have been demonstrated to correlate well with disease activity showing a significant decrease in titre (>50%) or disappearance during remission and flare-up during relapse [
      • Muratori L.
      • Cataleta M.
      • Muratori P.
      • et al.
      Liver/kidney microsomal antibody type 1 and liver cytosol antibody type 1 concentrations in type 2 autoimmune hepatitis.
      ].

      6.1 Autoimmune hepatitis

      ANA and SMA, markers of type 1 AIH, which account for about 75% of patients [
      • Werner M.
      • Prytz H.
      • Ohlsson B.
      • et al.
      Epidemiology and the initial presentation of autoimmune hepatitis in Sweden: a nationwide study.
      ,
      • van Gerven N.M.
      • Verwer B.J.
      • Witte B.I.
      • et al.
      Epidemiology and clinical characteristics of autoimmune hepatitis in the Netherlands.
      ], are not disease-specific and show a wide range of heterogeneity in terms of antigenic specificity. The fluorescence pattern of ANA in AIH is usually homogeneous using HEp-2 cells, but a speckled pattern is rather frequent. ANA-positivity is found in 43% of type 1 AIH patients [
      • Lohse A.W.
      • Mieli-Vergani G.
      Autoimmune hepatitis.
      ], and is associated with a variety of antigenic specificities including histones, double-stranded DNA (15%), chromatin and ribonucleoprotein complexes. However, no single pattern or combination is pathognomonic of AIH. Thus, the investigation of different ANA staining patterns has no clinical or diagnostic relevance in routine practice, and the use of HEp2 cells at AIH screening stage is not recommended [
      • Czaja A.J.
      • Homburger H.A.
      Autoantibodies in liver diseases.
      ,
      • Frenzel C.
      • Herkel J.
      • Lüth S.
      • et al.
      Evaluation of F-actin ELISA for the diagnosis of autoimmune hepatitis.
      ,
      • Villalta D.
      • Bizzarro N.
      • Da Re M.
      • et al.
      Diagnostic accuracy of four different immunological methods for detection of anti-F-actin autoantibodies in type 1 autoimmune hepatitis and other liver-related disorders.
      ]. SMA react to several cytoskeletal elements including F-actin with a reported prevalence of anti-actin antibodies in 41% of patients. When kidney sections are used as a substrate for indirect immunofluorescence, SMAvg (vessel/glomerulus) and SMAvgt (vessel/glomerulus/tubule) patterns can be identified, which are frequently associated with AIH, though not pathognomonic. SMAgt correlate with F-actin antigenicity [
      • Czaja A.J.
      • Homburger H.A.
      Autoantibodies in liver diseases.
      ]. In the diagnostic work-up for AIH, SMA/anti-actin antibody testing is appropriate and may also be done by ELISA [
      • Frenzel C.
      • Herkel J.
      • Lüth S.
      • et al.
      Evaluation of F-actin ELISA for the diagnosis of autoimmune hepatitis.
      ,
      • Villalta D.
      • Bizzarro N.
      • Da Re M.
      • et al.
      Diagnostic accuracy of four different immunological methods for detection of anti-F-actin autoantibodies in type 1 autoimmune hepatitis and other liver-related disorders.
      ]. However, indirect immunofluorescence remains superior to ELISA and provides the best accuracy. Indeed, actin is not the only target antigen of AIH-specific SMA reactivity, and thus ELISA can miss the diagnosis in about 20% of cases [
      • Liaskos C.
      • Bogdanos D.P.
      • Davies E.T.
      • et al.
      Diagnostic relevance of antifilamentous actin antibodies in autoimmune hepatitis.
      ,
      • Cassani F.
      • Cataleta M.
      • Valentini P.
      • et al.
      Serum autoantibodies in chronic hepatitis C: comparison with autoimmune hepatitis and impact on the disease profile.
      ,
      • Bortolotti F.
      • Vajro P.
      • Balli F.
      • et al.
      Non-organ specific autoantibodies in children with chronic hepatitis C.
      ]. ANA and SMA reactivity frequently coexist in the same serum, thus improving the strength of the diagnosis.
      LKM1 and/or LC1 are the serologic markers of type 2 AIH. The two antibodies often coexist in the same serum, but in some cases LC1 is present alone and is the only marker for the diagnosis of type 2 AIH. The major target autoantigen of LKM1 has been clearly identified as the cytochrome P4502D6 (CYP2D6) and the FTCD for LC1. However, neither LKM1 nor LC1 are highly disease-specific, as they have been described in a small proportion (5–10%) of adult and paediatric patients with chronic HCV infection [
      • Gassert D.J.
      • Garcia H.
      • Tanaka K.
      • et al.
      Corticosteroid-responsive cryptogenic chronic hepatitis: evidence for seronegative autoimmune hepatitis.
      ,
      • Lenzi M.
      • Manotti P.
      • Muratori L.
      • et al.
      Liver cytosolic antigen–antibody system in type 2 autoimmune hepatitis and hepatitis C virus infection.
      ,
      • Dalekos G.N.
      • Makri E.
      • Loges S.
      • et al.
      Increased incidence of anti-LKM autoantibodies in a consecutive cohort of HCV patients from central Greece.
      ,
      • Ferri S.
      • Muratori L.
      • Quarneti C.
      • et al.
      Clinical features and effects of antiviral therapy on anti-liver/kidney microsomal antibody type1 positive chronic hepatitis C.
      ,
      • Kerkar N.
      • Choudhuri K.
      • Ma Y.
      • et al.
      Cytochrome P4502D6 (193–212): a new immunodominant epitope and target of virus/self cross-reactivity in liver kidney microsomal antibody type-1 positive liver disease.
      ]. Anti-soluble liver antigen/liver-pancreas antibodies (SLA/LP) are the only disease-specific biomarker. The target antigen has been identified as a synthase (S) converting O-phosphoseryl-tRNA (Sep) to selenocysteinyl-tRNA (Sec), named as SepSecS [
      • Weis I.
      • Brunner S.
      • Henniger J.
      • et al.
      Identification of target antigen for SLA/LP autontibodies in autoimmune hepatitis.
      ,
      • Palioura S.
      • Sherrer R.L.
      • Steitz T.A.
      • et al.
      The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation.
      ]. This has led to the development of reliable commercial assays for SLA/LP detection (ELISA and dot-blot) [
      • Baeres M.
      • Herkel J.
      • Czaja A.J.
      • et al.
      Establishment of standardized SLA/LP immunoassay: specificity for autoimmune hepatitis, wordwide occurrence, clinical characteristics.
      ]. SLA/LP is detected in approximately 30% of patients with AIH (particularly in type 1 AIH) and is often associated with anti-Ro52 antibodies [
      • Weis I.
      • Brunner S.
      • Henniger J.
      • et al.
      Identification of target antigen for SLA/LP autontibodies in autoimmune hepatitis.
      ,
      • Palioura S.
      • Sherrer R.L.
      • Steitz T.A.
      • et al.
      The human SepSecS-tRNASec complex reveals the mechanism of selenocysteine formation.
      ,
      • Baeres M.
      • Herkel J.
      • Czaja A.J.
      • et al.
      Establishment of standardized SLA/LP immunoassay: specificity for autoimmune hepatitis, wordwide occurrence, clinical characteristics.
      ,
      • Liaskos C.
      • Bogdanos D.P.
      • Rigopoulou E.I.
      • et al.
      Antibody responses specific for soluble liver antigen co-occur with Ro-52 autoantibodies in patients with autoimmune hepatitis.
      ], but sometimes it is the only detectable autoantibody reactivity. SLA/LP has never been described in association with LKM1 and LC1 in type 2 AIH. The positivity of pANCA, originally considered specific for PSC and IBD, is also frequently present in patients with type 1 AIH [
      • Targan S.R.
      • Landers C.
      • Vidrich A.
      • et al.
      High titer antineutrophil cytoplasmic antibodies in type-1 autoimmune hepatitis.
      ,
      • Zauli D.
      • Ghetti S.
      • Grassi A.
      • et al.
      Anti-neutrophil cytoplasmic antibodies in type 1 and 2 autoimmune hepatitis.
      ], and it can be used as an additional element supporting the diagnosis of AIH, particularly if other autoantibodies are negative [
      • Vergani D.
      • Alvarez F.
      • Bianchi F.B.
      • et al.
      Liver autoimmune serology: a consensus statement from the committee for autoimmune serology of the International Autoimmune Hepatitis Group.
      ,
      • Alvarez F.
      • Berg P.A.
      • Bianchi F.B.
      • et al.
      International Autoimmune Hepatitis Group Report: review of criteria for diagnosis of autoimmune hepatitis.
      ]. A recent meta-analysis indicated that ANA have moderate sensitivity and specificity, SMA have moderate sensitivity and high specificity, and SLA/LP have low sensitivity and high specificity [
      • Zhang W.C.
      • Zhao F.R.
      • Chen J.
      • et al.
      Meta-analysis: diagnostic accuracy of antinuclear antibodies, smooth muscle antibodies and antibodies to soluble liver antigen/liver pancreas in autoimmune hepatitis.
      ].

      6.2 Primary biliary cholangitis

      AMA at titres higher than 1:40 have a high sensitivity and specificity for the diagnosis of PBC, being present in 90–95% of patient sera. AMA are in fact one of the diagnostic criteria of PBC along with elevated alkaline phosphatase and a compatible liver histology [
      • Zhang W.C.
      • Zhao F.R.
      • Chen J.
      • et al.
      Meta-analysis: diagnostic accuracy of antinuclear antibodies, smooth muscle antibodies and antibodies to soluble liver antigen/liver pancreas in autoimmune hepatitis.
      ,
      • European Association for the Study of the Liver
      EASL Clinical Practice Guidelines: management of cholestatic liver diseases.
      ]. AMA are typically detected by indirect immunofluorescence, characterized by the staining of all three substrates, namely smaller distal renal tubules, gastric parietal cells and liver cell cytoplasm. AMA target the 2-oxoacid dehydrogenase complex family. The major epitope (AMA-M2) is located on the subunit of the pyruvate dehydrogenase complex-E2, but AMA also react with the other two components of the pyruvate dehydrogenase complex. Immunoblotting and ELISA tests are now available, and these assays have an increased sensitivity and specificity (greater than 95%) [
      • Kaplan M.M.
      • Gershwin M.E.
      Primary biliary cirrhosis.
      ], being positive in nearly 20% of individuals originally considered as AMA negative by indirect immunofluoresence [
      • Oertelt S.
      • Rieger R.
      • Selmi C.
      • et al.
      A sensitive bead assay for antimithocondrial antibodies: chipping away at AMA–negative primary biliary cirrhosis.
      ]. The role of AMA in the pathogenesis of PBC is under debate because of the accessibility of the autoantibody to an antigen located in the inner membrane of mitochondria. Recent evidence indicates that AMA recognize pyruvate dehydrogenase complex-E2 in apoptotic bodies resulting in a complex that stimulates innate immune systems in genetically susceptible individuals [
      • Lleo A.
      • Bowlus C.L.
      • Yang G.X.
      • et al.
      Biliary apotopes and anti-mithocondrial antibodies activates innate immune response in primary biliary cirrhosis.
      ]. AMA reactivity can be detected decades before the clinical onset of PBC; however, 76% of asymptomatic patients with incidental AMA serum reactivity eventually develop PBC over more than 10 years of observation [
      • Metcalf J.V.
      • Mitchison H.C.
      • Palmer J.M.
      • et al.
      Natural history of early primary biliary cirrhosis.
      ]. AMA titre is not associated with disease severity or rate of progression [
      • Bogdanos D.P.
      • Baum H.
      • Vergani D.
      Antimitochondrial and other autoantibodies.
      ], can occasionally be detected (8–12%) [
      • O’Brein C.
      • Joshi S.
      • Feld J.J.
      • et al.
      Long-term follow-up of antimitochondrial antibody-positive autoimmune hepatitis.
      ] in patients with the classic phenotype of AIH without any other evidence of PBC, and may hint at co-existent or underlying PBC. Nonetheless, these patients should be classified and treated according to their clinical phenotype.
      Non-specific ANA are found in at least 30% of PBC sera [
      • Invernizzi P.
      • Selmi C.
      • Ranftler C.
      • et al.
      Antinuclear antibodies in primary biliary cirrhosis.
      ] without an apparent correlation with diagnosis or disease phenotype. However, some ANA reactivity with rim-like/membranous or multiple nuclear dot immunofluorescence patterns are highly specific to PBC. The identified targets are the nuclear body 100 kDa (sp100), promyelocitic leukaemia and small ubiquitin-like modifiers corresponding to the multiple nuclear dot-ANA, and proteins within the nuclear pore complex, including the 210 kDa glycoprotein (gp210) and the 62 kDa nucleoprotein corresponding to the rim-like/membranous pattern [
      • Wesierska-Gadek J.
      • Penner E.
      • Battezzati P.M.
      • et al.
      Correlation of initial autoantibody profile and clinical outcome in primary biliary cirrhosis.
      ]. Anti-sp100 and anti-gp210 are highly specific for PBC and can be used as markers of disease when AMA are absent [
      • European Association for the Study of the Liver
      EASL Clinical Practice Guidelines: management of cholestatic liver diseases.
      ]. Patients positive for anti-nuclear pore complex have a more severe disease course [
      • Wesierska-Gadek J.
      • Penner E.
      • Battezzati P.M.
      • et al.
      Correlation of initial autoantibody profile and clinical outcome in primary biliary cirrhosis.
      ].

      6.3 Primary sclerosing cholangitis

      Unlike AIH and PBC, autoantibody testing is not included in the diagnostic work-up of PSC. The most frequent autoantibody found in patients with PSC is pANCA, which is routinely detected by an indirect immunofluorescence assay. The target antigen is located in the nuclear membrane [
      • Terjung B.
      • Spengler U.
      • Sauerbruch T.
      • et al.
      Atypical p-ANCA in IBD and hepatobiliary disorders react with 50-kilodalton nuclear envelope protein of neutrophils and myeloid cell lines.
      ,
      • Terjung B.
      • Worman H.J.
      • Herzog V.
      • et al.
      Differentiation of antineutrophil nuclear antibodies in inflammatory bowel and autoimmune liver disease from anti-neutrophil cytoplasmic antibodies (p-ANCA) using immunofluorescence microscopy.
      ], but the antigens targeted by pANCA in PSC are still unknown. Several cytoplasmic proteins have been proposed, including lactoferrin, myeloperoxidase, cathepsin G, proteinase 3 and catalase [
      • Roozendal C.
      • de Jong M.A.
      • van den Berg A.P.
      • et al.
      Clinical significance of anti-neutrophil cytoplsmic antibodies (ANCA) in autoimmune liver disease.
      ]. The presence of pANCA in PSC has been described in up to 94% of patients with a mean prevalence of 63% [
      • Hov J.R.
      • Boberg K.M.
      • Karlsen T.H.
      Autoantibodies in primary sclerosing cholangitis.
      ]. Their specificity for the diagnosis of PSC is low [
      • Bogdanos D.P.
      • Invernizzi P.
      • Mackay I.R.
      • et al.
      Autoimmune liver serology; current diagnostic and clinical challenges.
      ] because the prevalence can be found at equal rates in AIH and PBC. No association links pANCA to the genetic susceptibility of PBC in terms of a particular HLA haplotype [
      • Mahal W.Z.
      • Lo S.K.
      • Chapman E.W.
      • et al.
      The immunogenetic basis for anti-neutrophil cytoplasmic antibody production in primary sclerosing cholangitis and ulcerative colitis.
      ], nor does pANCA represent a marker of association between PSC and IBD. In fact, only one small study [
      • Seibold F.
      • Weber P.
      • Klein R.
      • et al.
      Clinical significance of antibodies against neutrophils in patients with inflammatory bowel disease and primary sclerosing cholangitis.
      ] has reported a higher prevalence of pANCA in patients with PSC and IBD than in patients without IBD. The prognostic role of pANCA in PSC has also been investigated, but, even though studies seem to suggest an association between pANCA and end-stage liver disease [
      • Pokorny C.S.
      • Norton I.D.
      • McCaughan G.W.
      • et al.
      Anti-neutrophil cytoplasmic antibodies: a prognostic indicator in primary sclerosing cholangitis.
      ], most studies reported no differences in pANCA-positivity between early and advanced PSC, and a significant correlation between titres and disease activity has not been clearly demonstrated [
      • Roozendal C.
      • de Jong M.A.
      • van den Berg A.P.
      • et al.
      Clinical significance of anti-neutrophil cytoplsmic antibodies (ANCA) in autoimmune liver disease.
      ,
      • Lo S.K.
      • Fleming K.A.
      • Chapman E.W.
      A 2-year follow-up study of anti-neutrophil antibody in primary sclerosing cholangitis: relationship to clinical activity, liver biochemistry and ursodeoxycholic acid treatment.
      ]. ANA and SMA have been detected with variable prevalence in patients with PSC, i.e. 8–77% for ANA and 0–83% for SMA [
      • Hov J.R.
      • Boberg K.M.
      • Karlsen T.H.
      Autoantibodies in primary sclerosing cholangitis.
      ]. No particular ANA reactivity seems to predominate [
      • Angulo P.
      • Peter J.B.
      • Gershwin M.E.
      • et al.
      Serum autoantibodies in patients with primary sclerosing cholangitis.
      ]. None of the autoantibodies described in PSC have sufficient specificity and sensitivity to be used for screening or diagnosis.
      In conclusion, although autoimmune liver disease encompasses a wide – and sometimes overlapping – range of immune-mediated disorders, AMA and SLA/LP are the only disease-specific antibodies for these conditions. Therefore, in the case of overlapping autoimmune characteristics, making an appropriate diagnosis might still be tricky and it should rely on clinical, serological, radiological and histological features.

      7. Autoimmune pancreatitis

      AIP is a fibro-inflammatory condition involving the pancreas and, sometimes, extra-pancreatic organs. There are two distinct subtypes of the disease (type 1 and type 2), which clearly differ in histological, clinical and epidemiological features. Currently, the International Consensus Diagnostic Criteria are widely accepted for the diagnosis of AIP subtypes, and they are based on five cardinal features: (i) pancreatic parenchymal and ductal imaging, (ii) serology, (iii) other organ involvement, (iv) pancreatic histology, and (v) response to steroid therapy [
      • Shimosegawa T.
      • Chari S.T.
      • Frulloni L.
      • et al.
      International consensus diagnostic criteria for autoimmune pancreatits: guidelines of the International Association of Pancreatology.
      ]. In the absence of a definitive histological diagnosis, which generally allows the distinction between type 1 and type 2 AIP, a combination of several criteria is needed for the diagnosis of type 1 AIP. Serological abnormalities and other organ involvement are consistent with type 1 AIP [
      • Shimosegawa T.
      • Chari S.T.
      • Frulloni L.
      • et al.
      International consensus diagnostic criteria for autoimmune pancreatits: guidelines of the International Association of Pancreatology.
      ].
      There is increasing interest in identifying specific biomarkers for AIP since a differential diagnosis with pancreatic cancer is frequently required [
      • Frulloni L.
      • Scattolini C.
      • Falconi M.
      • et al.
      Autoimmune pancreatitis: differences between the focal and the diffuse forms in 87 patients.
      ]. The only biomarker for AIP in clinical practice is serum IgG4, an antibody that accounts for less than 5% of the total IgG in healthy subjects [
      • Shimosegawa T.
      • Chari S.T.
      • Frulloni L.
      • et al.
      International consensus diagnostic criteria for autoimmune pancreatits: guidelines of the International Association of Pancreatology.
      ,
      • Stone J.H.
      • Zen Y.
      • Deshpande V.
      IgG4-related disease.
      ]. Between 75 and 85% of patients with type 1 AIP and only a minority (less than 10%) of patients with type 2 AIP have elevated serum IgG4 [
      • Hart P.A.
      • Zen Y.
      • Chari S.T.
      Recent advances in autoimmune pancreatitis.
      ]. Since type 1 accounts for 80–90% of AIP and type 2 for only 10–20%, increased serum levels of IgG4 are observed only in up to 70% of AIP patients. Furthermore, IgG4 elevation may be observed in up to 10% of patients suffering from other diseases, such as pancreatic cancer, cholangiocarcinoma and PSC [
      • Hart P.A.
      • Zen Y.
      • Chari S.T.
      Recent advances in autoimmune pancreatitis.
      ]. Indeed, the specificity of serum IgG4 in the diagnosis of AIP is higher if the elevation is more than twice the upper limit of normal, and it increases proportionally with the serum IgG4 level. Considering the low prevalence of the disease (4.6/100.000) [
      • Kanno A.
      • Masamune A.
      • Okazaki K.
      • et al.
      Nationwide epidemiological survey of autoimmune pancreatitis in Japan in 2011.
      ] and the difficult differential diagnosis with cancer [
      • Hart P.A.
      • Zen Y.
      • Chari S.T.
      Recent advances in autoimmune pancreatitis.
      ], serum IgG4 should be managed carefully in clinical practice, in order to avoid misdiagnoses, and should only be considered as a part of the diagnostic algorithm [
      • Shimosegawa T.
      • Chari S.T.
      • Frulloni L.
      • et al.
      International consensus diagnostic criteria for autoimmune pancreatits: guidelines of the International Association of Pancreatology.
      ].
      Many studies have proposed other biomarkers for the diagnosis of AIP, but none have reported satisfactory specificity and sensitivity levels, and their use is still limited to research protocols. Up to 40% of AIP patients have ANA [
      • Okazaki K.
      • Uchida K.
      • Fukui T.
      Recent advances in autoimmune pancreatitis: concept, diagnosis, and pathogenesis.
      ]. Autoantibodies against carbonic anhydrase II and alfa2-amylase [
      • Sánchez-Castañón M.
      • de Las Heras-Castaño G.
      • Gómez C.
      • et al.
      Differentiation of autoimmune pancreatitis from pancreas cancer: utility of anti-amylase and anti-carbonic anhydrase II autoantibodies.
      ], lactoferrin [
      • Jin C.X.
      • Hayakawa T.
      • Kitagawa M.
      • et al.
      Lactoferrin in chronic pancreatitis.
      ], and pancreatic secretory trypsin inhibitor [
      • Asada M.
      • Nishio A.
      • Uchida K.
      • et al.
      Identification of a novel autoantibody against pancreatic secretory trypsin inhibitor in patients with autoimmune pancreatitis.
      ] were identified in 55%, 75% and 33% of patients, respectively. Other autoantibodies described in AIP patients are against trypsinogens PRSS1 and PRSS2 [
      • Hart P.A.
      • Zen Y.
      • Chari S.T.
      Recent advances in autoimmune pancreatitis.
      ]. Antibodies against the H. pylori plasminogen-binding protein have been proposed as a sensitive marker of AIP (sensitivity 94%, specificity 95%) [
      • Frulloni L.
      • Lunardi C.
      • Simone R.
      • et al.
      Identification of a novel antibody associated with autoimmune pancreatitis.
      ], but a recent study has not confirmed these data [
      • Buijs J.
      • Cahen D.L.
      • van Heerde M.J.
      • et al.
      Testing for anti-PBP antibody is not useful in diagnosing autoimmune pancreatitis.
      ].
      In conclusion, the only useful biomarker in clinical practice for AIP is serum IgG4. Considering its low specificity and sensitivity, other criteria are needed for the diagnosis of this disorder. New serological markers are expected in order to improve, alone or in combination with serum IgG4, the diagnosis of a disease that still remains difficult to recognize.

      8. Concluding remarks

      Based on recent advances in most fields of medicine we can expect increasing progress in the future in the development of more reliable serum antibody biomarkers for diagnosing immune-mediated gastrointestinal and liver diseases. These new tests should make it possible to predict a patient’s risk of developing a disease, facilitate early diagnosis, promote case-finding strategies, allow assessment of patient prognosis, and prove the efficacy of therapeutic strategies. This is particularly the case in those conditions, such as AIE, IBD, AIH, PSC and AIP, in which serum antibodies are of little use because of their poor diagnostic accuracy.

      Key messages

      • Case-finding is a good strategy in coeliac disease and autoimmune atrophic gastritis based on the measurement of their specific serum antibodies – anti-tissue transglutaminase and anti-endomysial antibodies for the former and anti-gastric parietal cell antibodies for the latter condition – followed by histologic confirmation on duodenal and gastric biopsy, respectively.
      • Anti-enterocyte antibodies are virtually 100% sensitive, but the lack of immunofluorescent diagnostic criteria may decrease their accuracy for the diagnosis of autoimmune enteropathy.
      • Optimization of anti-tumour necrosis factor therapy in patients with inflammatory bowel disease relies on serum drug levels and the presence or absence of anti-drug antibodies.
      • Unlike autoimmune hepatitis and primary biliary cholangitis, the diagnostic work-up of primary sclerosing cholangitis does not encompass autoantibody testing, and only anti-mitochondrial antibodies and anti-soluble liver antigen/liver-pancreas antibodies are disease-specific (for primary biliary cholangitis and autoimmune hepatitis, respectively).
      • The only available marker for autoimmune pancreatitis is serum IgG4, and considering the low prevalence of the disease and the difficult differential diagnosis with cancer, this marker should be managed carefully in clinical practice in order to avoid misdiagnoses.

      Conflict of interest

      None declared.

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